Reading MASIC results from PNNL's DMS — read_masic_data_from_DMS • PNNL.DMS.utils

Reading MASIC results from PNNL's DMS

read_masic_data_from_DMS(
  data_package_num,
  interference_score = FALSE,
  idScanPattern = "ms2",
  quantScanPattern = "ms2"
)

Arguments

data_package_num: (numeric or character vector) containing Data Package ID(s) located in DMS.
interference_score: (logical) read interference score. Default is FALSE.
quantScanPattern: Ion fragmentation method used to produce the scan used for peptide quantification
idscanpattern: Ion fragmentation method used to produce the scan used for peptide identification

Value

(data.frame) with reporter ion intensities and other metrics

Examples

if (is_PNNL_DMS_connection_successful()) {
test <- read_masic_data_from_DMS(4970)
}