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get_batch_experiments()
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Get experiment details for all LC-MS runs in a batch |
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make_id_to_quant_scan_link_table() make_id_to_quant_scan_link_table_for_dataset()
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Finding Links from PNNL's DMS |
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tool2suffix is_PNNL_DMS_connection_successful() get_dms_job_records() get_tool_output_files_for_job_number() get_output_folder_for_job_and_tool() get_job_records_by_dataset_package() get_datasets_by_data_package() download_datasets_by_data_package() get_results_for_multiple_jobs() get_results_for_multiple_jobs.dt() get_results_for_single_job() get_url_from_dir_and_file() get_results_for_single_job.dt() path_to_FASTA_used_by_DMS()
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Utilities for interacting with PNNL DMS |
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read_AScore_results_from_DMS()
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Read AScore results from folder |
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read_MSstats_from_MSFragger_job()
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Reading MSFragger-generated MSstats from PNNL's DMS as MSnSet object |
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read_generic_job_from_DMS()
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Reading generic tool output from PNNL's DMS |
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read_masic_data_from_DMS()
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Reading MASIC results from PNNL's DMS |
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read_msfragger_data_from_DMS()
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Reading MSFragger output from PNNL's DMS |
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read_msgf_data_from_DMS()
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Reading MS-GF+ output from PNNL's DMS |
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path_to_study_design_from_DMS() read_study_design_from_DMS() write_study_design_to_DMS()
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Reading and Writing Study Design Tables |