Reading and Writing Study Design Tables

Source: R/read_study_design_from_DMS.R

Fetches study design results from DMS. Checks that study design files are internally consistent. DMS functionality not useful outside of PNNL unless connected through VPN.

  • path_to_study_design_from_DMS(): gets location of study design files from the DMS.

  • read_study_design_from_DMS(): reads study design tables from the DMS data package folder.

  • write_study_design_to_DMS(): writes study design tables to the DMS so that they can be accessed by others.

path_to_study_design_from_DMS(data_package_num)

read_study_design_from_DMS(data_package_num, useHTTP = FALSE)

write_study_design_to_DMS(data_package_num, study_design, overwrite = FALSE)

Arguments

data_package_num

(integer) data package number for DMS

useHTTP

(logical) whether to...

study_design

(list) study design files: fractions, samples, and references.

overwrite

(logical) whether to replace any existing study design tables when writing files.

Examples

if (is_PNNL_DMS_connection_successful()) {
  study_design <- read_study_design_from_DMS(3606)

  fractions  <- study_design$fractions
  samples    <- study_design$samples
  references <- study_design$references
}